rs45978569 SNP Detail

Summary

• ID
  rs45978569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121164035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGAATGTT TTACCTGTAC GGGTGTATGT GCATACATGC
  ATGTCTGGTA CACTCAGAAG AGGACATGGT ATCTCCTGGA GCCGGAGTAA CAGGTGGTTG
  Y
  GAGTCACCCT GTGGGTGCTG GGTGTTGAAG CTGGGTCCTC TGCAAGAGCA GCAAGCACTT
  GTACCTGCAG AGTCATCTCT CCCTGCTTTG GACCTTTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135719338	ENSMUSSNP1780903	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45978569					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121164035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	75 bp proximal
Gm33363	predicted gene, 33363	within coordinates
Rr397973	regulatory region 397973	616 bp downstream
Rr397974	regulatory region 397974	within coordinates
Rr584057	regulatory region 584057	767 bp distal
Rr584058	regulatory region 584058	339 bp distal
Rr584059	regulatory region 584059	within coordinates
Rr584060	regulatory region 584060	928 bp proximal
Tssr31438	transcription start site region 31438	788 bp downstream
Tssr31439	transcription start site region 31439	727 bp downstream