rs45970479 SNP Detail

Summary

• ID
  rs45970479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13841757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAATCT TTGGGCTGAA
  AAATTTTTTG AAGTTATCCA ACTAATTTGT GATTAGGATG ACTGAGGTAA TTTGATCAGT
  TTGGTCTTCA TAATCAATAG ACATAATTTT ATTTTAAAAA GTAACTACCT TCTTTTAGAG
  TTAACCTATT TCAGATTTTT GTCCAATGAT GCTCAGCTTC ATTACAGGCA AAATGGTTTT
  W
  TTCTGTGGAT TTTTCATGTG CAGACCTATC AGCATTTGAA TTCATAGACC AGTAAAATAT
  TCTAAAATCA TATCTAGTTG TTCATTTAAA ATATCAGTTT TTCTGCTTAT AGCTTTATAG
  TCATTAAGGC TTTAAAAAAC ATGTAAATTT GGAGTTCTGT ACTAGTGATT TCTGAAAGCT
  TTATTGATAG AAGTTTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss133003931	ENSMUSSNP3748210	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs45970479					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13841757 () rs orientation: forward

Symbol	Name	Function Class
Gpr85	G protein-coupled receptor 85	1816 bp upstream
Rr378961	regulatory region 378961	1898 bp upstream
Rr626596	regulatory region 626596	1396 bp distal
Tssr59851	transcription start site region 59851	1850 bp upstream
Tssr59852	transcription start site region 59852	1817 bp upstream