rs45962639 SNP Detail

Summary

• ID
  rs45962639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153360415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGCCCCC AGGTCAGGGA TACACACAGG TCTTAATGGG
  CAGCCTGGAT TCCAGGATGA TGTCTGGTTC TTCCTCCTAC CTCCTGAGAG ACACCTTCCA
  R
  CCAGCTCACC TCCTACAACT CCGTACCTAG GAACCAGGTC CCAATCAACC CTGGAGGCTG
  ATGTCCTCTT CCTAGTAGCC CCTCCCTGCC ATGCCCAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147995222	ENSMUSSNP7171776	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45962639					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153360415 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567666	regulatory region 567666			998 bp distal
Rr567667	regulatory region 567667			1334 bp distal
Rr567668	regulatory region 567668			1357 bp proximal