rs45962405 SNP Detail

Summary

• ID
  rs45962405
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86056430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GGGGTAAAGA GGAATGAGTG
  W
  TCCTGTGAAA CCCCACTGTC CCCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133354666	ENSMUSSNP3405639	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321845689	CHEV_6_86029442	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45962405					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86056430 () rs orientation: forward

Symbol	Name	Function Class
Add2	adducin 2	Intron
Rr633329	regulatory region 633329	1354 bp distal
Rr633330	regulatory region 633330	141 bp distal
Rr633331	regulatory region 633331	within coordinates
Tssr57448	transcription start site region 57448	1385 bp downstream
Tssr57449	transcription start site region 57449	1359 bp downstream