rs45961763 SNP Detail

Summary

• ID
  rs45961763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102030462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC TAATTCTCAT AAGTTGTCCT
  Y
  TGACCTCCAT ATCTACCCAT TTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135554106	ENSMUSSNP36561	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320854501	CHEV_3_101927069	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs45961763					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102030462 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	1792 bp distal
Rr582183	regulatory region 582183	801 bp distal
Rr582184	regulatory region 582184	946 bp distal
Rr582185	regulatory region 582185	881 bp distal