rs45961414 SNP Detail

Summary

• ID
  rs45961414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118977730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCTGTA GTACTCTGGG
  CCCAGACATG CCTGTAACCC TGTGGTTTCT TCCTGCAGAA GGTGACGGGC CGCCTCATGT
  TGGCTGTGGG AGGAGCAGTG CTCGGATCAC TGCAGTTCGG CTATAACACT GGTGTCATCA
  ACGCCCCCCA GAAGGTAAGT GTGCTATGCC ACTCCCCATA TATACCATCA CCCACACACA
  Y
  TCATGGTGCC ACCTCGGTGT CCATCATTGA CATCAACTGA CCATCTTCCC TCCCAGCTGG
  AATTCTAGAA TCCCAGGGCC ATAGAATGGT GCTACTGTGG TAGGCTGTCT TGACTGTTTC
  CCAAACAGCA CAGACATTTA CACTGATCAG TATAGTGGAA TTTCATTTAT ATAGTATTTG
  GGGCTCCTGA AAGCTCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147324327	ENSMUSSNP4749203	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45961414					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118977730 () rs orientation: forward

Symbol	Name	Function Class
Rr377076	regulatory region 377076	within coordinates
Rr598496	regulatory region 598496	625 bp distal
Rr598497	regulatory region 598497	278 bp proximal
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	Intron
Tssr38701	transcription start site region 38701	74 bp downstream