rs45956223 SNP Detail

Summary

• ID
  rs45956223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148219102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTAAAAT GATAGTGATC
  TGGGGATGCT TGCCACCCTC ACAACTGTGT GCAGCTCCGA GATCTGGCAG AGAGGTAGCA
  AGGCTTACAC ACAGAACCAG GACCCCGTTT TCCAAAATGT CTTCTCAGAT TGTACCTTTC
  AGTCACTCTG AACTTTGGCA TCTGGTTTTT CAACCTAGGG AGAAAGCAAA TCATGACATG
  R
  AGTTTTATCC TTCTGATGGC ACAGGCCAGG CCTTCCCTAT CTCCCCACAT TTTCCCGAAG
  ATGAAGCATA ACTCCGAAAG GACAAGTTAT GGATGCAAGG TTAAAGCAAT AGCTGGTAAA
  TGTTTCATCC TAAAATCATA CCTAGGCCAG TTCCATACAT TTTTTTAGGC TGGGGCACAA
  TTCTCAGCTG GAATCATTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147923861	ENSMUSSNP1120938	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45956223					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148219102 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	within coordinates
Rr566887	regulatory region 566887	1075 bp distal
Rr566888	regulatory region 566888	1651 bp distal
Rr566889	regulatory region 566889	1270 bp distal