rs45950257 SNP Detail

Summary

• ID
  rs45950257
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143026078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCA CAGTCGGCAT TTATGTCTCC
  S
  GTCCCGGGGC GGGAGCGGGT GGGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321403825	CHEV_4_142889411	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45950257					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143026078 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	mRNA-UTR
Rr604189	regulatory region 604189	1712 bp distal
Rr604190	regulatory region 604190	56 bp distal
Rr604191	regulatory region 604191	within coordinates
Rr604192	regulatory region 604192	1608 bp proximal
Tssr44447	transcription start site region 44447	218 bp upstream
Tssr44448	transcription start site region 44448	26 bp upstream
Tssr44449	transcription start site region 44449	within coordinates