rs45949816 SNP Detail

Summary

• ID
  rs45949816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60981158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTTTGT GTAAGATGAT
  TCAAAATAGG TGTGAATGGC TCTATGAAGA AATAACAGTA GCTGATCTCA AAGACAACGT
  TGTTAGTGGG TACCCAAGTA TCTGTGATAC GTGACTTCTT TGAAGAAGAT GAAAGGTATG
  TTACCTCCAG ACAAAACTTG AAGCTCGTAG TAGTAGGAGA ATAGAAGATA GAAAGGGAGG
  R
  AGAGAGCAAG AATGAGCAAG AAAGGAGATT CAACGCCTCA GTCAGGATTC CTTTCTGAGG
  CTCTGTCCCA TGGGCACTTC CGGTTTAGAA TGTTTCCAGA CTCACAAACC ATCAATAAAT
  AAACCATCGT AGATCAGTTA CAAAGAGCTT GGAGCATGCT CCGCTCTTGT TTAACAGTGT
  CTACCAAGTG GAGGTCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135222444	ENSMUSSNP1500313	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45949816					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60981158 () rs orientation: forward

Symbol	Name	Function Class
Rr577472	regulatory region 577472	1037 bp distal