rs45949660 SNP Detail

Summary

• ID
  rs45949660
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100691507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGAAAG AAAAGGAAAA
  CAGAGGATGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GCGCGCGCAT
  TGCCAGGAGA TCACTGACAC TTCCTTCTTA GAGGTACCAG GCCTTGGACC AAAGGCCTCA
  TTTGAGGTTA TTTCAGACAG TACTAGGCAC AACGATAACT TCTCACGCAG AAATCTGAAG
  W
  ACCTGCTGGT GATGGTAGCC TCCAGGGTTT TGTAGTTGTG GCCACAGATC AAGGAAGTCG
  AACAGTTGCC AAGGGTGTGT TGAGCACTGT CATAGATAAG TGAAAGCGAT GGCCAGAGGA
  GAATTGGGTA CAGGAGAGGA ACACGGGGTT TCTTCTCTGC AGCCATCTTT ATATATATCT
  GGTGGTCAGA TATAAAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147117526	ENSMUSSNP3727600	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321228031	CHEV_4_100506915	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45949660					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100691507 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	581 bp distal