rs45943657 SNP Detail

Summary

• ID
  rs45943657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:63806994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACTACA CACCAGCCAA
  CAGAACCAAC AGAGGAGCTC CAAGTAAAGA CCAGCGCTGC CGCCACAACC TGCTTTCTCA
  TTCAAATCCT CATGCTCACA TTGGAGCACC CTCCCTCTTA ACCCTCAGCT CAGGGCAAAT
  CCGGAACTGG AGCGCGCGCG AGTGGACTGG AGCGCCATCG AGGAACAGGA GCCAAGAACT
  R
  GACGTGGACC CCTTATGAAG ATGCTACTGC TAGGCATAGG CCAGAACCCC TGGGAATAAA
  GATCTTCTTC TGTCCTCCCT CGCAGCAAAT TTCAAAGAAT TCCAAGACCA GGGACACCTC
  TGATAGATTT TCAGTTTAGG TGGCTAGCGG GTTAAAGACG CTGCTGGAAC AAAGTTGGAG
  AGTTCAGGGG AAGCGAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60416430	NES15918981	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45943657					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416430	NES15918981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63806994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	318 bp distal
Plch1	phospholipase C, eta 1	101 bp upstream
Rr577602	regulatory region 577602	211 bp distal
Rr577603	regulatory region 577603	within coordinates
Tssr33440	transcription start site region 33440	166 bp upstream
Tssr33441	transcription start site region 33441	141 bp upstream
Tssr33442	transcription start site region 33442	96 bp upstream