rs45942086 SNP Detail

Summary

• ID
  rs45942086
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42267877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATGATAA AATTCAGTAA
  TGGCAATATA TATTTAGATA CAAGGATGAA AACACTTAGA GTATGTGGGA GACAATGTAT
  GAAGTAGAAG AGTGACATAA GCAGATCCTT AGACAACTTA GAGAGGACAG AGTTTGAGTC
  AGGGGCTTGA GTTGCAGTGA GACAAGCTTG GAGGCAGAAA GGATGTCCAT AAGAAGTAAA
  S
  GTGTTAACAA ATACTTATGC TAATATAGAA AAATTAAAAG AAGTTAGGTA GCAACCTTTT
  CAGTTTCCCC CATGAAACCT ACAAAGCTGC ATGTGTAGTG AACCATTTCC CCTCTGTCCC
  TGTACCACAT ATAGCAGATC TACTTCTTAT CCTATACAGG GCCAATACAT TCTCATTTTT
  GTCACAAACC TCAGTGTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60394888	NES15891694	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45942086					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60394888	NES15891694	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42267877 () rs orientation: forward

Symbol	Name	Function Class
Gm65785	predicted gene, 65785	within coordinates
Rr576020	regulatory region 576020	819 bp distal