rs45941622 SNP Detail

Summary

• ID
  rs45941622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18907969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGAACAT AGTATTCAGT
  GGTGTTTCTG CCTGGTTCTG ATAGTTAAAA CCTCTGGATC CCTCAGATGA CTCTGATTAG
  ACTCTGTGGG AGACTAATCA AAACCAAAAC CTACAATTAA GAGAAAGATT TATTGTGTGT
  GGGATGGCAG ATGAAGGAGT GACATGGTAG AAAATTGGGA GAGAAGAACC AGAAAACATA
  R
  TATACATGTA TGAAATTGTG AAAGAAAGTG TTTACTAAGA AAAATTATGT GAATTAAATT
  CATTCATTCA CCTTATAAAG GAAAGGATTT TCTATATAGA ATTCCATTTT CTCAGGGAGG
  TCTCCTATGA GACTAACGTG TTCTTGTGCA GTAGGAGAAA CAAACATCAG AGTAAAGAGG
  AAGCCCGCAT AGAGCACAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133043340	ENSMUSSNP186252	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45941622					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18907969 () rs orientation: forward

Symbol	Name	Function Class
Rr626961	regulatory region 626961	567 bp distal