rs45940220 SNP Detail

Summary

• ID
  rs45940220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40496681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA CCTGAATTTG ATTCCTCTCA
  Y
  ATCAGGTGGC TTACAATCAC TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135039495	ENSMUSSNP3200869	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320728255	CHEV_3_40341454	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45940220					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40496681 () rs orientation: forward

Symbol	Name	Function Class
Gm30184	predicted gene, 30184	within coordinates
Rr374853	regulatory region 374853	569 bp downstream
Rr575816	regulatory region 575816	1409 bp proximal
Rr575817	regulatory region 575817	1902 bp proximal