rs45936492 SNP Detail

Summary

• ID
  rs45936492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29924778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTATCAG GCATGGAAGG
  ATGACTAGGG GTCGGATGTG AATGGAGACA GAGGGACACC TTGAGGAAAG GCAGGGAACA
  GAATATGCTG TGTGAATAAA AGTGGGAATG GTAAATATAT GGGTACAGAG TAGGTTCAGA
  TGAGGATATT TTGGGTCCTT TTGTTTTCTT AGCTTAATAA GGAAAGCTTG AGTGAGAGGT
  R
  TGGCTTAGTG ATAGAGCTTG CCTAGCATGT ACAAGGCCGA GGGTTCAATC CTCAGTACTG
  AAATACATAA ATAAGAAAAG GCTTGGAGAG AAGAATCATG GGATCAGAAG TAGATTTATT
  ATCAGGGCCC TTTCTAGGAA GAAGTGGCAG TAGCCAGTAT TAGCTGTGTG TGGCTTTACA
  TCCTAGTGCA AGACACTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133092412	ENSMUSSNP1375220	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs45936492					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29924778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr627673	regulatory region 627673			822 bp distal
Strip2	striatin interacting protein 2			Intron
				Noncoding-Transcript-Variant