rs45936200 SNP Detail

Summary

• ID
  rs45936200
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145191945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG CTGATGACTT TGATTCCTGG
  K
  TTGATACAAA TAATTGCCTT GGGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147859574	ENSMUSSNP6619303	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45936200					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145191945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	1092 bp distal
Gm65281	predicted gene, 65281	within coordinates
Gm70672	predicted gene, 70672	1464 bp upstream
Rr377358	regulatory region 377358	588 bp downstream
Rr604377	regulatory region 604377	1161 bp distal
Rr604378	regulatory region 604378	974 bp distal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	within coordinates