rs45935249 SNP Detail

Summary

• ID
  rs45935249
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38342639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAGTTA CAGAAATGGC
  ATAGCTCCGA CATTTATAAA CAGTGCATTT CCTATATTAC TAGAAATGGT TATTTTTTTT
  TCTCCCAAGA ATCATGTCTG ATGTTTGGTT GTCCATAGTA ATTATACTTG GGTGAAATGT
  TTGGGGTAAA GACGGAGACA CAGAAAATCT TTGTTTACAA TGACGTTTAG CTCTGTAGAA
  S
  GAACTGTCAG CTTTTCAGGT CGACCTTGCT GCTGTGACTC TATTCATTAA CTTAAAATGC
  TGCTTCAGTG GGGATGGGCA GTAGCTAAGT AGGTGAAGTG TTTCCCTAGC ATTCGTGGTG
  TTGAATCTCC ATCACAGCAT AAAACAGGCT CTTCGGCTTA CAAGTGTAAC CCCAGGATTC
  AGTAGGTAGA GGCAAGAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60391344	NES15888600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45935249					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60391344	NES15888600	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38342639 () rs orientation: forward

Symbol	Name	Function Class
Rr575656	regulatory region 575656	619 bp proximal