rs45935160 SNP Detail

Summary

• ID
  rs45935160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163381026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTTTGTTCC CTGTGTGGAG CCGGGGAATG GCCAGGGCCT
  GTCACACGCT AGGCAAGCAT TCTACCACTG AGCCATATTC CAGCACAAGG CCTTTCAAAG
  Y
  TAGGACGTAA AAACCTTTCA CAGTATCAAG TGGTTCCATT TGGTGTTAGC CAGAATGAAC
  CTTCAGCTCG GTTTTCCATA TGAAATTCAA AGACCAAAGA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148205386	ENSMUSSNP114113	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45935160					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163381026 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	141 bp proximal
Rr569405	regulatory region 569405	1122 bp proximal
Rr569406	regulatory region 569406	1686 bp proximal