rs45933152 SNP Detail

Summary

• ID
  rs45933152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172461624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGT TACAGACAGC TGTGAGCTGC
  Y
  GTGTAGGTGC TGGGGATGGA ACCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013343	PARCsnp_1.20750	PARC_SEQ	INBRED	f	SNP		C	T
ss120015561	PARCsnp_1.10930	PARC_SEQ	INBRED	f	SNP		C	T
ss146197899	ENSMUSSNP3453961	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320126706	CHEV_1_174564188	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs45933152					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172461624 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	1120 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	863 bp downstream
Rr423641	regulatory region 423641	1419 bp distal
Rr423642	regulatory region 423642	1278 bp distal
Rr423643	regulatory region 423643	1001 bp distal
Rr423644	regulatory region 423644	152 bp distal
Rr423645	regulatory region 423645	231 bp distal
Tssr10245	transcription start site region 10245	982 bp downstream
Tssr15247	transcription start site region 15247	1248 bp upstream
Tssr15248	transcription start site region 15248	1188 bp upstream
Tssr15249	transcription start site region 15249	1114 bp upstream