rs45930954 SNP Detail

Summary

• ID
  rs45930954
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153300358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCAAAACCAA GCGTGTACTG CACCCAAGGT GTTTGGGGCA
  GTACTTGCCT GTGCTGTATC TAGTGGCTTC TTGGCAGCCT TGGGGTGGCG CACACAGCGC
  C
  TGCACTTTGT CCCATGTGTA CAGCCATGCC AAGTGCCAAC AGATGTCGCT GGAAACCCCT
  CCACTCAGCT TCTAGGCCGC CACGCCTACA TTATGAATTT C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136109460	ENSMUSSNP246610	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs45930954					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153300358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Gm52633	predicted gene, 52633			1381 bp upstream
Rr587708	regulatory region 587708			32 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant