rs45925492 SNP Detail

Summary

• ID
  rs45925492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:4341467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACATCTG GGTATGGGAG
  GAACTTTACA GGGTTATATA CTAAAATGAA ATTATGTTTG AATACTACTA TCAGCACAGA
  AATGAAAAAT CCTTCCACAG TCTTAACTAA ATGCTAGTAC ACAGCTCCAG GTTTTAATAT
  TTATGTTAAG AAAACCATTT TGCTTTCTTT TACAGCACAT AAAAATAGGA TATCATAAAG
  R
  CAAAGTATTA GCATTTAAAA TATGCACATC TATTAAAGGT TATGAAAAAT AGTGTGTTAT
  AAAATTATTT GCATTAACGT AAAAAACATC TTACTAAATA ACAACAAAAA TAATTATTCT
  ACCATTATTA CTTTGAAGAC TATATTTAAA ATACAAATAA ATCAGAAAAT GACCTTTGCA
  CAAGGGAGAA AACAAGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60365960	NES15871706	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45925492					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365960	NES15871706	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:4341467 () rs orientation: forward

Symbol	Name	Function Class
Rr573153	regulatory region 573153	1539 bp proximal