rs45920587 SNP Detail

Summary

• ID
  rs45920587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180430040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC TAATTACTTT CCTTTGCACC
  Y
  TGGCTGCTTT GGGCTGCGGG CTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148393306	ENSMUSSNP1673349	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320632341	CHEV_2_180522952	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45920587					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180430040 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	within coordinates
Rr572845	regulatory region 572845	1644 bp distal
Rr572846	regulatory region 572846	1225 bp distal
Rr572847	regulatory region 572847	1297 bp distal
Rr572848	regulatory region 572848	within coordinates