rs45918899 SNP Detail

Summary

• ID
  rs45918899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36915087 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G CTTACACTTC CATGTTGCTG TTCATCACCT AAGGAAGTCA
  GGACTGGAAC TCAAGCAGGT CAGAAGCAGG GGCTGATGCA GAAGCCATGG AGGGATGTTC
  Y
  TTACTGGCTT GCTTCTCCTG GCTTGCTCAG CCTGCTCTCT TATAGAACCC AAGACTACCA
  GCCTAGAGAT GGTCCCACCC ACAAGGGGCC TTTCCCCCTT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132871702	ENSMUSSNP6428230	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45918899					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36915087 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13092	CpG island 13092	1845 bp proximal
Rr374830	regulatory region 374830	1725 bp downstream
Rr575409	regulatory region 575409	555 bp proximal
Rr575410	regulatory region 575410	1678 bp proximal
Tssr28876	transcription start site region 28876	1057 bp upstream
Tssr28877	transcription start site region 28877	1076 bp upstream