rs45909127 SNP Detail

Summary

• ID
  rs45909127
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83808413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG GCGAGAGAGA GGAGGGGCGC
  M
  AGGAGGCGGC AGGTCATACG TAGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133350477	ENSMUSSNP3556674	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321844842	CHEV_6_83781425	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45909127					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83808413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17619	CpG island 17619	within coordinates
Gm68055	predicted gene, 68055	within coordinates
Paip2b	poly(A) binding protein interacting protein 2B	Intron
Rr399726	regulatory region 399726	289 bp upstream
Rr632951	regulatory region 632951	148 bp distal
Rr632952	regulatory region 632952	within coordinates
Rr632953	regulatory region 632953	within coordinates
Rr632954	regulatory region 632954	300 bp proximal
Rr632955	regulatory region 632955	320 bp proximal
Tssr61712	transcription start site region 61712	252 bp downstream
Tssr61713	transcription start site region 61713	274 bp downstream
Tssr61714	transcription start site region 61714	305 bp downstream