rs45904890 SNP Detail

Summary

• ID
  rs45904890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAGACCCTGG CTTAGTCCTC CAATCCTGCC TCCTAACTGT
  GTAGAATTTG AAATCTGTGT GAAATCATAT GAAACCCATA CTTTCAACCC CACTCCCCCC
  Y
  CCAAAATCTT TATTTTCATG CATACTTTGT GAAAACAAAT TGAGACAAAA TTAAATTCCT
  GTCCACCTGA GAGAGAAAGA CATCTTTCCC CACTGCTCTG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147079083	ENSMUSSNP7030149	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45904890					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469338 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	618 bp proximal
Tssr25364	transcription start site region 25364	1109 bp downstream
Tssr25365	transcription start site region 25365	1233 bp downstream