rs45904802 SNP Detail

Summary

• ID
  rs45904802
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152410531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCGCC ATGGCGCCTG
  TGGTTAGTAT GGCTCCGCGT GCGGCCGCGG TTCCGTGAGC GGCACGTGGG CCTGGTGGGC
  TGGCTCGGGC ACAGGCTCGC GTGGGGGACT ACGCTCTGCA GCATCAGCCC TGAGTGGCCT
  GGCAAGCGTG GCGGAGAAAG CCGGGGCCGC GGCTGGGTCC AGCACGTTGT GGGCGGAGGA
  S
  GCCGCGGCTC GACGCGGGGC GGGAGAGCCG AGGAAGCTCG GGGTGTCGGG TCGGGCTCCT
  GTTAGCGGCC CGCGGGAGCT TAGAGGCTGT GGGCTGGATA GCATCGGAGT CCGAGTCCAA
  CCCCGGCCTC CGGGCAGCGG GCCCGATTAC TTGGGCGAGG GGCGGGGAAG ACGGATGTGA
  CCTGCCACCC GGGGCAGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148080845	ENSMUSSNP3926432	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45904802					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152410531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9430083M05Rik	RIKEN cDNA 9430083M05 gene			1349 bp upstream
Cpgi15411	CpG island 15411			within coordinates
Rpl22	ribosomal protein L22			Intron
				Noncoding-Transcript-Variant
Rr398901	regulatory region 398901			228 bp downstream
Rr605841	regulatory region 605841			195 bp distal
Rr605842	regulatory region 605842			within coordinates
Rr605843	regulatory region 605843			210 bp proximal
Tssr40547	transcription start site region 40547			198 bp downstream