rs45904602 SNP Detail

Summary

• ID
  rs45904602
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37742179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGATCTTGC TTCCCTTCCG AGTGCTGGAC ATCCAGTCAG
  CACTAAGCCA GGTTTAATGC CTTGATTATT AATTATTATT ATTTTAAGTT TTAAGTCCAC
  W
  ACAGGAGTTG CCCTAAATCA CTGAAACTAA ATCTACTCCA GAAGGTCACT ATTCCCTACT
  TGAACCTCTC AGTGCTTTTT GTGCTCTGAC CCCCACCTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134811110	ENSMUSSNP5240815	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320711768	CHEV_3_37586952	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45904602					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37742179 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	288 bp upstream
Rr575540	regulatory region 575540	779 bp distal
Rr575541	regulatory region 575541	859 bp distal
Rr575542	regulatory region 575542	299 bp distal
Rr575543	regulatory region 575543	106 bp distal