rs45904509 SNP Detail

Summary

• ID
  rs45904509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143027019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA CTCCCAGATG CCATAAATTC
  Y
  TTTCAACAAA AGCATCTGAG GATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147779122	ENSMUSSNP2189160	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321403829	CHEV_4_142890352	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45904509					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143027019 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	885 bp upstream
Rr604190	regulatory region 604190	997 bp distal
Rr604191	regulatory region 604191	395 bp distal
Rr604192	regulatory region 604192	667 bp proximal
Tssr44447	transcription start site region 44447	1159 bp upstream
Tssr44448	transcription start site region 44448	967 bp upstream
Tssr44449	transcription start site region 44449	938 bp upstream