rs45904146 SNP Detail

Summary

• ID
  rs45904146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83993166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGCAATG TGGGTAATGG
  ACCATATGTG GTTGTGGTGA CCATGGCACG GCCAGTTAGG AGATGCTGTC ACTCATCGGG
  CAGAAGCAGA TGCCAGTGGG TGGCATCAGG AGCTTGTGGA TGCCCAGGTG GTACCGACAT
  AACAAGTATT CAGAAGAGTG ACCTAAATTG CAGTTAACTG GCATTTTAGG CTCAAGTAGA
  Y
  TTAAATGACA GTTCTAAAGT GATCGGTCAC TCCCTTGAAT ATGATGGTGG GTTCTGGATA
  TATATGTATG TGCACTGCAC ACCCCCAAAA GCATTACCTG AACCAGGCCG ATTCACTGCT
  TTCTCTGCTC TGCTGTCCAG GATCCCCGGA CATTTGGGTG TCATTGGCAA TTGGCTCTAT
  GCTACCTTGC TTACAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60905575	NES15954375	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45904146					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905575	NES15954375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83993166 () rs orientation: forward

Symbol	Name	Function Class
Dysf	dysferlin	Intron
Rr632974	regulatory region 632974	472 bp distal
Rr632975	regulatory region 632975	1292 bp proximal
Rr632976	regulatory region 632976	1404 bp proximal