rs45904066 SNP Detail

Summary

• ID
  rs45904066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:4465436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAAGGGA GGAAATGGAG
  AGAGGCCAAG ACAAATTTTC TGATCAAAGC CCAATGTTTA CTAAAAGTCT GTGCTTATAA
  AGGGAGAAAG CCCATCTCCC ACTGATCCAT TCTTGATGCC TGTTGCCAGC CTGTAAGTAA
  TTTGTCTGAC AGCAGTAAGT TGGCAGTAAG GTGGCAATCA CTGGGTTGCC TGCTGTCTCC
  R
  GAATCTCTCA GGAAGGCAGG TTCAGCCTCT CAGCAGGTAG CAGCATCTTG GAGAAGAACA
  GTGCTGATGA CAGAACAATA GAATCATCTA AGTGGGAAGA CTCCGCCCCA GGTGGTCTCA
  TTCACAGTAG CAGCAAGGTC TGGATCAGCC TGCTCAAGAC TAGGGAAGGC TACATAGTGA
  TTTTTCAGGA AGAGATACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145948768	ENSMUSSNP1610392	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45904066					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:4465436 () rs orientation: forward

Symbol	Name	Function Class
Rr588287	regulatory region 588287	674 bp distal
Tssr40838	transcription start site region 40838	1307 bp upstream