rs45891954 SNP Detail

Summary

• ID
  rs45891954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56489082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCATT ACATGCACGT
  GGTGAACAGA CATGCACAGA CATAGCACAC ATACATATAA AATAAAAATA GATGAGCCGA
  AAAGCATAAC AACAACAAAA CCCAACAACC CAATGTTGAT GAAATACACA CAGCACGTAT
  GCCAGTTGGC ATTTGTTTAA TAGTCGAGTA GATTTGGAGT GGGCACAAGG TGAGTTCAGC
  Y
  AATCCCACCT GCTGCCCTTT TTACTACAAT AGGGCTGATG AGATGATTCA GTCGGTAAGA
  GTGCTTGATA CATAAGCATG GGGACCAATA CTCACATCAA ATCTGAGTGT GTCCACTCAC
  ATGCTGTAAC GCCAGCGCTG TGGGGAGCAG AGACGAGCAT CTATGGCCCT CACTGGCCGA
  CTGGCCTCCA AGTTCAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61809901	NES17750316	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45891954					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809901	NES17750316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56489082 () rs orientation: forward

Symbol	Name	Function Class
4933404M09Rik	RIKEN cDNA 4933404M09 gene	1293 bp upstream
Gm24716	predicted gene, 24716	1156 bp downstream
Rr480710	regulatory region 480710	258 bp distal
Rr480711	regulatory region 480711	1258 bp proximal