rs45889039 SNP Detail

Summary

• ID
  rs45889039
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106487090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAC CTGGAGGCAG GGGTTGATGA
  A
  GAGACCATAG ATCGGGGGTG CTACT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147169472	ENSMUSSNP1831986	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45889039					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106487090 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	1103 bp upstream
Rr596781	regulatory region 596781	210 bp distal
Rr596782	regulatory region 596782	408 bp proximal
Rr596783	regulatory region 596783	1232 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron