rs45886432 SNP Detail

Summary

• ID
  rs45886432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATCTCT GAGTGACCAT
  GCCTATTTCT CTCTGCTTCC TAGTGTGTGT GGCTTGTGGG AGCCCTGGGC TCATTTCCTG
  GTCTCTCTGC CGTAGTGTGC ATTTCTAGAA ATGGTTTAAA AATTCTCAGC GACTGGTAAG
  AGAGAGAAAT CGAGTTTCTT TTTCTTTTTT CTTGCTAGCC CATCATATAA GGGTAAACTG
  R
  GGGGCATGAA AGTAAAACAA CGAATGGTTT TGCTTTCCTT TAATCCGTGC ATTGAGGAAA
  AGGTTATGGT GTAGCTGGTA TATCAGACTG TCGATGGAAA TTATTTCCTA TTTAACAAAT
  AGGCCCAGAG ACGAGTAACT CGTTTGGGAA AGCCTCTTTT AAAATGCCTT CAGGGGCTGG
  AGAGATGGCT CAGCGGTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874520	ENSMUSSNP3111114	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320958008	CHEV_3_127600540	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45886432					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1099 bp distal
Fam241a	family with sequence similarity 241, member A	1299 bp upstream
Rr398009	regulatory region 398009	1049 bp downstream
Rr584896	regulatory region 584896	1603 bp distal
Rr584897	regulatory region 584897	808 bp distal
Tssr35608	transcription start site region 35608	1389 bp upstream
Tssr35609	transcription start site region 35609	1352 bp upstream
Tssr35610	transcription start site region 35610	1285 bp upstream