rs45885089 SNP Detail

Summary

• ID
  rs45885089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59241423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC TGTTAGTCAC CCACAAAGCA
  W
  AACAAGCCCT CCTGCAGTTT TTCCG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146400807	ENSMUSSNP562493	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321140371	CHEV_4_59254295	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45885089					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59241423 () rs orientation: forward

Symbol	Name	Function Class
Rr593009	regulatory region 593009	1498 bp distal
Rr593010	regulatory region 593010	897 bp distal
Rr593011	regulatory region 593011	101 bp distal
Rr593012	regulatory region 593012	865 bp proximal