rs45883939 SNP Detail

Summary

• ID
  rs45883939
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149222197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA TGGCTCACTG GTTAGCAGTC
  G
  CTGAGAGCAC CGGCCAGACG CACCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148028569	ENSMUSSNP3346590	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45883939					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149222197 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	140 bp upstream
Cpgi15320	CpG island 15320	within coordinates
Rr398863	regulatory region 398863	within coordinates
Rr604839	regulatory region 604839	182 bp distal
Rr604840	regulatory region 604840	within coordinates
Rr604841	regulatory region 604841	84 bp distal
Tssr44623	transcription start site region 44623	145 bp upstream
Tssr44624	transcription start site region 44624	115 bp upstream