rs45880785 SNP Detail

Summary

• ID
  rs45880785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97978306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGGTGA CAATGCATGG
  GGCAAAGCAC ACATGCACCC TGTGCAAGCC TGCAAAGATG TCCTGCAGGG CAGCATGGGC
  CAGTGCTGCC CAAACACCCT GGACTCATTA CTCACTTGAC TTTTAATTAA CTTCTTGTCA
  TTGCATATCT AGAAACATCC TGTTTACTGT TTCCAGTATT TTTGAAACCC AACGTTCAGT
  Y
  TCACAACTCC ATATCCACGA CCAACAGATT TTAAAAGTGG GACTACAGAC AGCAGGCAGG
  AGTTAGCGAC ACTTCCATGA CAGTTTTCGG GGAAGAGGAA TGCCTCTGTC AGTGGAGGTT
  CTGGGATAAG GGACATGTCT TTGACACTCT AATCTGATTT CACAGTAGAA CAGGCACAAT
  GCTATTAGCT GTGGAATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147085100	ENSMUSSNP3586504	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45880785					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97978306 () rs orientation: forward

Symbol	Name	Function Class
Nfia	nuclear factor I/A	Intron
Rr367651	regulatory region 367651	1329 bp upstream
Rr595683	regulatory region 595683	within coordinates
Rr595684	regulatory region 595684	1163 bp proximal
Rr595685	regulatory region 595685	1318 bp proximal