rs45876402 SNP Detail

Summary

• ID
  rs45876402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGAGACT TATTATTGAC
  GGGTTATGAG TTAGAAATAA AGAATGGCTA TATTTATAGC TTCCTAGCAC TGATAACAAA
  GTGCTAGTAC TCTTTTATCT TCCATATCTT ACGCTTCCAG AGGTTGGGGT GAGCCCAGAA
  TTTGGGGGAA CCAACATACA GGCAGTAGCA GGGTATCTGC TCTTTGGAGG CTGAAGGAGA
  R
  AAGTCATTTC CTCACCCTTT CCTCGTGGAG ACTGACGACA CTCCTTGGCT TGTGAATATT
  CTCACAGCAA GACTTCCTGG CTGTGCCTCT CCTGCCTTCC TTTTACCTAC AGAGACCCTT
  AGAATATTAA ATTTGTGCCT AACTAGTAGC ACAGGATAAT CTTCCGGGCA CAAAATACTT
  GATCACATCT GCACAATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146246448	ENSMUSSNP458791	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321100062	CHEV_4_44087603	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45876402					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1664 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1964 bp distal
Rr591150	regulatory region 591150	1467 bp distal
Rr591151	regulatory region 591151	1734 bp distal
Rr591152	regulatory region 591152	545 bp distal
Tssr41484	transcription start site region 41484	2000 bp upstream
Tssr41485	transcription start site region 41485	1710 bp upstream