rs45874837 SNP Detail

Summary

• ID
  rs45874837
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104847795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAATGCTA ACAATGATGG
  CCATTCCCCA ACCCCCTTGC CTTTTTACTC TACACAAACC TATGAAAACC TACTGACAGC
  CTGTCCAAGG TCATCAGTGT CCTAGTGCAC CTTTCTCCCT TTTACTTGAT AGTTGTATTC
  CTTGGAGAAA TAAGGCATCT GTTGAGGCAA GGCCTGCGTG TCAGCATGTG GGTCCTCACG
  K
  TTAGGAAATA CTTAAGCCTT TGATTTGTCC CATGTCTGCA TTCTTCTCGG ACATCTTCAA
  GCTACAGACA TGAAACCAGG AGTAGACCCA AAGATAGAAG TAGGGAAATT TCCACTGAAA
  GCCAAGGTAG AATTTTCCTT CCTTTTCACA CAAGATCTAT GAAGCTGCTG TTGTCAGCAG
  CTCACCAGAC ATACTCCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431375	NES15935841	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45874837					SNP	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431375	NES15935841	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104847795 () rs orientation: forward

Symbol	Name	Function Class
Gm65748	predicted gene, 65748	337 bp upstream
Rr582631	regulatory region 582631	1660 bp distal
Rr582632	regulatory region 582632	206 bp proximal
Rr582633	regulatory region 582633	348 bp proximal