rs45870402 SNP Detail

Summary

• ID
  rs45870402
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:124481978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TATCTTACCC CATTTACAGG GTAACAGAAG TGCAAAGGGG
  TTAATTAGCT TGCCCAAGGT AGCTTGGTAA ATAGTAGAGC TAGACTCCTC AGCAGCCCAG
  C
  TAGAACCTGA GTTCATCAGT CTGTAGGACC TGTGTTCATT GGCCTATAGA ATCCATGTTC
  ATTGGCCTAC ATTTCACTGT TCAGTAATGG GTGGAGTAAG C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147471210	ENSMUSSNP4848815	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45870402					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124481978 () rs orientation: forward

Symbol	Name	Function Class
Rr564124	regulatory region 564124	within coordinates
Rr564125	regulatory region 564125	1180 bp proximal
Sema6d	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	Intron