rs45861873 SNP Detail

Summary

• ID
  rs45861873
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136799286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATT GCCAGATGCA GCGAGTCAGA
  W
  GCTCAGGGCT ATCTCCGACC AGCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147592739	ENSMUSSNP5397856	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321360829	CHEV_4_136627890	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45861873					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136799286 () rs orientation: forward

Symbol	Name	Function Class
Gm68277	predicted gene, 68277	within coordinates
Rr602532	regulatory region 602532	459 bp distal
Rr602533	regulatory region 602533	534 bp proximal
Rr602534	regulatory region 602534	805 bp proximal