rs45860800 SNP Detail

Summary

• ID
  rs45860800
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86744192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT TATTAACTAG GGCTGGTGGA
  M
  CTATGACTTA AGTTATTCCA CTACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133358977	ENSMUSSNP4475509	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321847128	CHEV_6_86717204	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45860800					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86744192 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633503	regulatory region 633503	1311 bp distal
Rr633504	regulatory region 633504	869 bp distal
Rr633505	regulatory region 633505	1813 bp proximal
Tssr1922	transcription start site region 1922	1605 bp upstream
Tssr61849	transcription start site region 61849	1783 bp upstream
Tssr61850	transcription start site region 61850	1376 bp upstream
Tssr61851	transcription start site region 61851	1289 bp upstream