rs45858879 SNP Detail

Summary

• ID
  rs45858879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18817620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAAGGT GGAGATGTTG
  ATGAATCTGA CTTGGCTTTC CATAACTCCT GCAAAAGTTT TGTTGTGTGT TATTCCCTCT
  TCTCTTGGTT GTTCATTTTC ATCATTACAC AGTACTATTG TGCCCTGACT GCAATTTTCC
  AAGTAAACAT AATGACAACC ATGGATAGTG ATATAATTAG CATCCTCACA ATATCTTAAC
  R
  ATGTTAAGTA TCATTATTGA CACATTTATG TTTGGGACAT TTAATATATA CTGAATCTTT
  TCAACAATTT CTCTTTTAAA AGTTTAATTT TCAAATTTTT CTCTTTCCTA TATGTGTGTG
  TCTGTATATG CCATCTAAGT GCGGTGTCCT TTGAGGCCAT AAGAAAGCAT TGGAATCCCT
  AGAGCTGGAG TTAAAGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133041710	ENSMUSSNP1624539	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45858879					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18817620 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	1805 bp proximal
Rr626952	regulatory region 626952	1931 bp proximal