rs45857174 SNP Detail

Summary

• ID
  rs45857174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83975015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGGAGG CTGCCTCCAA
  CCTCCTCTGC AAGTTCATGA ATTCAAATAT ACCTGTTCAC TGATCCAACA ACTTAAAACA
  CAACACAAAT ACATAGGTTT TGAGTTTTAA AAATACTTTT TTTTTTTAAG ATAGAGTCTC
  ACACTATTGA TCGGGTTGAC CTTGAACTCA CAGAAATCAC CTGAGAGCTT TGATAAGGTA
  Y
  GAACCAGCAC ACAGAGACAT AAACTTTTAA TTAATTCTTT GACAATTTCA TACAATATAT
  TTGAATCCTA TTCATTCTTC CAACTCCTCT CAGATTCTCC CCCACCCAGC CCTACCTACC
  CAACCTCCTT GTATCCTCCT TTAAAAACAA AAAACAAAAA AAACCTCATC AACTCCAATG
  TATGCAACCC ACATACTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135420241	ENSMUSSNP5367289	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320822185	CHEV_3_83871630	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45857174					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83975015 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Rr397735	regulatory region 397735	1469 bp upstream
Rr578973	regulatory region 578973	1426 bp distal
Rr578974	regulatory region 578974	1447 bp proximal
Rr578975	regulatory region 578975	1733 bp proximal