rs45853253 SNP Detail

Summary

• ID
  rs45853253
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10346245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGAATG CAATGGTGAG
  CATAGGATAG ACCCTTGTTC TCATAATTTG TGAAATACTC CAACAGTGAA AGGGGGCTAA
  AGGGGGAGAT GGTCCAGAAA TTACTGAGCC AACTTCTGAT GGTCAGCATT GGCCTGACTG
  GCACACTGCA AGTCCTCTGC ATTATTGCAA ATTTCTAGAA ACTTTATAGG AGTCGAATCC
  K
  CATGAGTATA GATTTCATCT AATATTTGTA TTAATTTTTC AAGAATTTCA TATGATCTAT
  TTTAATCATA CTCGCCCCCT GTCTTCTCCT TAACTCCACC CCCTCATACC TTCCCTAACT
  TTGTGTCTTT TTGTTTTAAT GGATAACCTA TCACCACCCA TTTGTGCTGC CCATATACTC
  TGGGTGCAGG GCCATCTACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134580798	ENSMUSSNP6267247	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320653246	CHEV_3_10281185	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45853253					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10346245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr573601	regulatory region 573601			176 bp proximal
Rr573602	regulatory region 573602			1808 bp proximal