rs45850654 SNP Detail

Summary

• ID
  rs45850654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165473324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCCATGA GGAAAAGTCT
  CACCAGGTTC TTGGAAGACT GGAGGGAGGG GCCTCCTGAT CCTCAGGGAC AATATTTGTG
  ACCACAAACC CACAAAGGTA ATATCTCAAA GGGTCTCCAA CAGCCTGCTC TGCAGCATTA
  AAGACTCAGC CTATTTCCTG GGGTTGAGCA GGAGAGGGTT AGACACCAGG TAACGCTCAA
  R
  ACAGACTGAC TGGGTCATCA CTGCCTGGCA TACTAGCCCT GTGACTTGTG ACAAAGCAAA
  CCACAGGGAA ACACCCCCCA CCCCCAAGCC AGTTCCTGCC TTTACAGAGG ACCCGGCCAC
  CGGCCGGCCG ATCCAGCTCA GAGATCTTTT TCTAAGTCCA TCTACATAAA GTGGGCTGTT
  CTCAGCCCAG GACTCACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608521	CHEV_2_165456904	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45850654					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165473324 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569968	regulatory region 569968	1030 bp distal
Rr569969	regulatory region 569969	573 bp proximal
Rr569970	regulatory region 569970	1580 bp proximal