rs45849877 SNP Detail

Summary

• ID
  rs45849877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142147326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGAAAGT ATCAGACAGA
  AGCAGGCCTC GGTTTGACAC CTGCTAAACA TTATTTAAGT CTTAAGACTG ACATCAAACC
  ACTTGTACCC ATTCTATTTA TAACTTTCCT AATCAGCTTC CTGAGTTTCC AGATGGAGTG
  TAGGAATGTA ATCACATTCA GCAGATAACT TTGCCTGAAG ACAAAGTTCC CTGAGTGACC
  R
  GAGGGATTTC CTATCAATGA TTTCATTTCA ATGTACTGTC ATCTACAATT TTGTGACAGG
  GAAAGTTATA TGGGACAAAC CTGGAAGAGG CATGTAGTTT AGCTGGTTTA GATTCTTACA
  TTTTGGCTAA CTTGAGCTAA TGGTATAATT ATGCACAAAT CACCCACATA TTCTAAGACC
  TTGAAGGAGA TCAGCCTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61087279	NES16608346	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45849877					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087279	NES16608346	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142147326 () rs orientation: forward

Symbol	Name	Function Class
Gm64781	predicted gene, 64781	404 bp downstream
Rr586432	regulatory region 586432	823 bp distal
Rr586433	regulatory region 586433	652 bp proximal
Rr586434	regulatory region 586434	1370 bp proximal
Rr586435	regulatory region 586435	1975 bp proximal