rs45848679 SNP Detail

Summary

• ID
  rs45848679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143887731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAACTT TGTAAAGAAA
  ATTAAAAGAT GCCTACTTAA ATAAACACCC AATAATGTTT TCAATGGAAG TCCATTGGGC
  CTTCCCACTT ATACTGCAGA GTTATTGAAT GTGTATCTGA TTTAATTTTT TTTCATGAGA
  TAAGGTCTTC CCATGTAACT CAGGCTAGCC TTACATGTTC CATCGTTGTA TCTCAACTCC
  Y
  AAGAATAACC AGCTTTCAGT TTTTTATCTG CTAAATCCCT CAACCTGGCT TTGGGAGGTG
  GGGGTCAGAA ACAACTTCCT GGGGTGGTAT GTGCTACAGA CAAGTACAAC TACCCTCAGA
  CAGCCCTGTG TGCAACAGTC ATACAGGTAG ACAGTCAGGG TCTGCCAACT GCTTATAAAA
  ATTACTTTTG CCTAGGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147779459	ENSMUSSNP1060767	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45848679					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143887731 () rs orientation: forward

Symbol	Name	Function Class
Banf2	BANF family member 2	Intron
Gm75473	predicted gene, 75473	within coordinates
Rr566364	regulatory region 566364	758 bp distal
Rr566365	regulatory region 566365	486 bp proximal
Rr566366	regulatory region 566366	594 bp proximal