rs45846832 SNP Detail

Summary

• ID
  rs45846832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122213120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCTGAAGT CCTCAGGATT TGATTTGGGG TGTGGGGTGG
  GGTGGGCATC ATGATTCTAT GACCTGGTAT CATATATTGA ACTGTGTGCT GTACTCCCAC
  Y
  GTTACCACAG CAATCTTTGG CATAAACCAA GCCACCAGAT AGTGCAGAGA TGACTTTATA
  ACTAGGTTTT GATAAACAGC ATATGTAGGT TCACGAAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320911476	CHEV_3_122122389	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45846832					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122213120 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	286 bp upstream
Cpgi13768	CpG island 13768	82 bp proximal
Rr397985	regulatory region 397985	110 bp upstream
Rr584325	regulatory region 584325	268 bp distal
Rr584326	regulatory region 584326	within coordinates
Rr584327	regulatory region 584327	318 bp proximal
Tssr31494	transcription start site region 31494	268 bp upstream
Tssr31495	transcription start site region 31495	301 bp upstream
Tssr31496	transcription start site region 31496	322 bp upstream
Tssr31497	transcription start site region 31497	395 bp upstream
Tssr31498	transcription start site region 31498	514 bp upstream