rs45846816 SNP Detail

Summary

• ID
  rs45846816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67514641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAATAT GTCTTTTGCT
  TTTACTTCCT TATTTTTTGC ATCCTAGGAT TAGCAAAAAA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAATTACCC TTCCTGGGTC TCTGTTGCCC AGAGTAAACT GGGTACATCA
  GTTTCTGGCT CTGTTTCTTA GATTTTTTTT TTTTCCTGAG AATCAAACTA AATATACAAG
  R
  CAGTGAATGG TAAAGCTTGG TAAACTCCAA GACAATGTTA TATTCTGTTA AAAAAATTAT
  CCCATCTCCT CACTTTTCAA GTGATTTGCT GGGTGGTCAC AATCTACTAT CTACTTGTAA
  TACCACCTCA TTTTCATTCC CCTGAGTCCC AAGCCATATG GAGGAAAGCT AGTGGGGAGG
  CAGTCTCAGG GCTGATACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894244	NES15959633	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45846816					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894244	NES15959633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67514641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	1781 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631670	regulatory region 631670	1851 bp distal
Rr631671	regulatory region 631671	1581 bp distal
Rr631672	regulatory region 631672	1678 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	1861 bp upstream
Tssr61257	transcription start site region 61257	1960 bp upstream
Tssr61258	transcription start site region 61258	1855 bp upstream
Tssr61259	transcription start site region 61259	1787 bp upstream