rs45846590 SNP Detail

Summary

• ID
  rs45846590
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54506216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAGTTAA ACGTGGGTCA
  CAGCATCACA TTCGTGATCA AGGGTCAGGA ATTAAACTGT GTGAGTGTCA GTGAGGCAAG
  GAGGATGAGG GCCACCTTAG AGGGTGTGTC TCCCATGCTA ACCTCTGAGA AATTATCCTC
  AGCGTGTGAA TGGTGTCAAG AATCGTGAAG GATTTGAAAT AGGTGAGATA TAGGATTATT
  B
  GGGCCATGCG GCTTCCAAGG TCTGTTCTGA ATGATTCATG AAAAATGCAG CTTCCCGTTT
  GCATCTTGCG ATCTCTGTTC TAAGCGTGCT TTCTCTGATA CTTTGAGATT CCTTGTTTTT
  TCTTTAAAGG CCCCCTCCTG CTAAATGGCT GCTTGTCCAC CCTGTGGCTG ACCTCACACT
  GGGTTATCTC ACATGGCTAC                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss135184597	ENSMUSSNP3798486	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss320772146	CHEV_3_54402717	CHEVERUD	SCREENING_POP	f	SNP			C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs45846590					SNP	G	G	C	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54506216 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	651 bp distal